Battam1111/Myco

v0.5.18 — 2026-04-23 — auto-germ pulse carries transparency fields

Contract-layer patch with zero contract-surface deltas. v0.5.17
oversight: the auto-germ soft-fail path
(_auto_germ_advice_response) builds its own pulse dict inline
rather than going through _compute_substrate_pulse, so it
missed the project_dir_source + resolved_project_dir fields
that v0.5.17 added to every other dispatch response.

What changed

• Nothing in the R1–R7 rule text.
• Nothing in the category enum / exit-policy / exit codes.
• Nothing in the 18-verb manifest surface.
• Nothing in the dimension roster count (still 25).

Fixed — auto-germ advice pulse now includes the transparency fields

Reaching _auto_germ_advice_response proves that
_detect_workspace_root returned a file:// root from the MCP
client, so the patched pulse can confidently report:

"project_dir_source": "mcp.roots/list (root has no substrate)"
"resolved_project_dir": "<workspace root path>"

Two-part diagnostic value:

• Confirms roots/list IS working on this host (previously the
  operator would wonder whether it was even reached).
• Names the exact workspace path the client exposed (for when the
  client claims workspace X but Myco expected Y).

Break from v0.5.17

None. This patch is purely additive to the auto-germ path's pulse.

Observable delta: operators running a Myco tool in a workspace that
has no substrate will now see the project_dir_source +
resolved_project_dir keys in the pulse sidecar (they were absent
in v0.5.17 for this specific branch).