cdeust/Cortex

• fix: resolve ruff lint errors — unused/missing EmbeddingEngine imports
• release: v3.9.0 — engram slot cache (#11) + safe GPU embedding (#10)
• feat: safe GPU auto-detection for embedding engine (#10)
• perf: cache engram slots + COUNT(*) for allocate_engram_slot (#11)
• feat: sync all agents, skills, commands, hooks, tools from zetetic-team-subagents
• fix: remove unauthorized attribution from all agent files
• style: "powered by ai-architect.tools" right-aligned on two lines
• style: unify brand identity — teal accent + ai-architect.tools tag
• feat: add ASCII art banner — SVG for GitHub README
• security: fix command injection vectors (CodeQL CWE-78)
• docs: compiled arxiv PDF + LinkedIn endorser post draft
• fix: remove unused StageDetector import (ruff F401)
• style: ruff format run_benchmark + stage_detector
• feat: temporal assembler beats oracle — 0.471 MRR (+33.4%) on BEAM-10M
• fix: apply genius review corrections across all docs
• docs: arxiv-ready LaTeX paper for cs.IR submission
• fix: replace all LaTeX with Unicode + code blocks for GitHub rendering
• fix: LaTeX syntax issues in research papers
• docs: rewrite science.md + research post as arxiv-style papers
• docs: add per-category breakdowns under each benchmark
• docs: update agent count to 27 specialists
• docs: full narrative README rewrite — Zikkaron-style tutorial
• docs: full narrative README — hook, scenario, benchmarks with context
• docs: add auto-wiki feature + science table with brain analogies
• fix: remove unused own_budget variable (ruff F841)
• docs: move Scientific Foundation above Benchmarks
• docs: slim README from 680 to 416 lines — product page, not paper
• docs: slim README to product page, move science to docs/
• docs: rewrite How It Works + Architecture in plain language
• docs: reorganize scientific foundation into plain-language results
• style: ruff format all context_assembly + benchmark files
• docs: link README to public ai-prd-builder origin, not private repo
• docs: trace architecture origin to ai-prd-builder (public, Sep 2025)
• docs: add verifiable commit SHAs for prior art provenance
• docs: update README with BEAM-10M scores + research post
• feat: structured context assembly — 21.5% BEAM-10M improvement

Full Changelog: https://github.com/cdeust/Cortex/compare/v3.8.0...v3.9.0