graphify

Bug-fix release. pip install -U graphifyy / uv tool upgrade graphifyy.

Ships a live regression fix and a security fix from 0.8.41, plus two correctness/feature fixes.

Fixes

• 🔴 /graphify --update no longer deletes a changed file's freshly re-extracted nodes. The 0.8.41 root= fix (#1361) made build_merge's prune actually match relative source_file values — which then matched the just-re-extracted nodes of changed files (still in prune_sources) and removed them, so --update on a changed file could wipe its nodes. The update runbook now prunes only genuinely deleted files; changed files are reconciled by build_merge's replace-on-re-extract (#1344). The full build also passes root= to build_from_json, and the extraction-spec source_file is pinned to the verbatim path, so full build and incremental updates never drift. (#1366 — thanks @RelywOo)

• 🔒 Security: .graphifyignore and .gitignore are now merged per directory instead of .graphifyignore silently replacing the dir's .gitignore. Previously, adding a .graphifyignore disabled that directory's .gitignore entirely, so a file excluded only by .gitignore — including neutrally-named secrets like prod-dump.sql or customer-data.json — got indexed into the graph (whose artifacts embed file contents and are routinely committed). .gitignore is read first and .graphifyignore last, so it still wins on conflict (including ! negations); adding one can only ever exclude more. (#1363)

• Java record declarations are now first-class type nodes, and new Foo(...) constructor calls produce a calls edge. Previously a record appeared only as its file node (degree 0). (#1373)

• Large text documents are no longer silently truncated during semantic extraction. _read_files capped every file at 20,000 chars and dropped the rest; oversized Markdown/text/rST docs are now sliced at heading/paragraph boundaries so the whole file is extracted (slices share the parent source_file, so the graph isn't fragmented). Code files and PDFs are never sliced. (#1369)

Full changelog: https://github.com/safishamsi/graphify/blob/v8/CHANGELOG.md