graphify

graphify 0.9.5

pip install -U graphifyy==0.9.5

Correctness (two 0.9.4 regressions + a false-hub fix)

• Cross-file indirect_call now resolves via the graphify extract CLI, not just the extract() API — a 0.9.4 regression where the callable-target guard went stale after id relativization dropped every cross-file indirect edge on the CLI path.
• graphify cluster-only no longer reuses stale community labels after the graph changed — a re-scoped/re-clustered graph kept old labels on a different community set. It now writes per-community membership signatures and hub-relabels changed communities with a warning.
• Cross-file name resolution respects case in case-sensitive languages (#1581) — from pathlib import Path no longer resolves to a shell export PATH=... node (one variable had become the #1 god-node with 266 false edges). Only PHP/SQL/Nim still fold.

Language extractor fixes (thanks @Synvoya, @jerryliurui)

Ruby & Groovy inheritance edges; Elixir multi-alias imports; Fortran function calls; Rust enum-variant + tuple-struct references; Julia qualified/relative/scoped imports; SystemVerilog qualified fields; Scala var fields; PowerShell class base types; ObjC protocol-to-protocol adoption; PHP promoted constructor properties; C# auto-properties; C++ base-class template args; Swift enum associated values; and Swift singleton-into-local resolution (let x = Type.shared; x.method(), #1604).

Incremental --update data fixes

Hyperedges from unchanged files no longer dropped (#1574); deleted files no longer leave ghost nodes, with symlinked-root hardening (#1571).

Robustness & tooling

merge-graphs tolerates mixed directed/multigraph inputs (#1606); corrupt graph.json gives an actionable error (#1537/#1536); cross-chunk node-ID collisions warn instead of silently dropping (#1508); the skill accepts Homebrew [email protected] interpreters (#1586); git-hook foreground stalls eliminated (#1601); direction-aware skill-version warning (#1568); deterministic hub community labels; Windows hook worker limit (#1554).

Serve / MCP

Question/filler stopwords dropped from query terms (#1597); optional project_path lets one MCP server back a whole workspace of projects (#1594).

Thanks to all contributors: @sheik-hiiobd, @Synvoya, @jerryliurui, @AdrianRusan, @SUDARSHANCHAUDHARI, @socar-tender, @goodjira, @TPAteeq, @guyoron1, @nuthalapativarun, @matiasduartee, @joanfgarcia, and the #1601/#1597 authors.