graphify

v0.9.22 Bugfix

This release fixes issues for SREs watching stability and regressions.

Published 6d RAG & Retrieval

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✓ No known CVEs patched in this version

Topics

antigravity claude-code codex gemini graphrag knowledge-graph

+5 more

leiden openclaw llm skills tree-sitter

Summary

AI summary

Fixes several edge‑case bugs including URL source eviction, false‑positive directory pruning, stable Office sidecar naming, improved JSON corruption handling, added CLI subcommand aliases, corrected nested containment edges, and disambiguated colliding file labels.

Full changelog

Fix: a node whose source_file is a URL/virtual scheme (gdoc://, s3://, http://, ...) is no longer evicted on the second graphify update (follow-up to #2051). The #2051 disk-absence sweep guarded such sources with a literal "://" check, but write-side path normalization collapses the double slash (gdoc://x becomes gdoc:/x), so the guard missed the node on the next run and dropped it into the disk-absence eviction branch. The scheme is now matched tolerantly (and a Windows drive letter like C:/ is not misread as remote).
Fix: a real source directory named env/.env/*_env is no longer silently pruned as a false-positive Python virtualenv (#2058). detect's directory-noise heuristic matched those names before .graphifyignore negation and with no trace in any output bucket, so codebases using them as source dirs (common in UVM/ASIC verification) lost large subtrees undetectably. The venv heuristic for those names is now gated on an actual marker (pyvenv.cfg, an activate script, lib/python*, or conda-meta/); venv/.venv/*_venv stay name-only, and every pruned-as-noise directory is now recorded in a pruned_noise_dirs bucket for traceability.
Fix: Office (.docx/.xlsx) and Google-Workspace sidecars are now named from the scan-root-relative path, not the absolute path (#2059). The absolute-path hash salted the sidecar name with the checkout location, so committing graphify-out/ (a supported workflow) produced a new duplicate .md per clone/worktree, each ingested as a distinct source document. The relative hash is stable across checkouts while still disambiguating same-stem files; the Google-Workspace sidecar path additionally gains the NFC normalization it was missing.
Fix: serve.py's "graph.json is corrupted" recovery message is now reachable (#2005, thanks @kimdzhekhon). json.JSONDecodeError subclasses ValueError, and the broad except (ValueError, FileNotFoundError) clause was ordered first, so a truncated graph printed the bare Expecting value... instead of the documented rebuild hint. The JSONDecodeError clause now comes first.
Fix: graphify god-nodes/god_nodes is now a real CLI subcommand, and graphify extract --output DIR is honored as an alias of --out (#2004). god_nodes was an analyzer, an MCP tool, and a documented capability but had no CLI command; --output was silently dropped on extract even though graphify tree documents it. (The affected/reverse-dep import-id mismatch from the same report is tracked separately.)
Fix: a nested class/object/trait now gets its contains edge from the enclosing type instead of the file node (#2040). Across ~19 languages the edge was hard-coded to source from the file, so the containment tree was flat (file -> Inner) rather than nested (file -> Outer -> Inner); it now sources from the enclosing type when present, with top-level types still contained by the file.
Fix: file nodes that share a basename now get a directory-qualified label so explain/discovery can tell them apart (#2032). In directory-per-entrypoint repos (Supabase Edge Functions, Next.js page.tsx, Rust mod.rs, Python __init__.py) dozens of files named e.g. index.ts collided under one label, breaking free-text discovery for exactly those files. Colliding file nodes are relabelled to the shortest unique path suffix (process-order/index.ts); unique basenames stay bare, and node ids/edges are unchanged.

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About graphify

AI coding assistant skill (Claude Code, Codex, OpenCode, Cursor, Gemini CLI, OpenClaw, Factory Droid, Trae). Turn any folder of code, docs, papers, images, videos, or YouTube links into a queryable knowledge graph

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Earlier breaking changes

v0.8.18 Breaks Java `extends` edges; they are renamed to `inherits`. Update queries filtering on `relation="extends"` for Java nodes.