ammawla/encode-toolkit
MCP Developer ToolsA Claude‑Code plugin and MCP server that lets you query ENCODE data, cross‑reference 14 genomics databases, run 7 analysis pipelines, and generate publication‑ready methods from natural language.
Features
- Query ENCODE datasets via 20 live API tools
- Cross‑reference with 13 additional genomic databases (GTEx, ClinVar, GWAS Catalog, etc.)
- Execute 7 built‑in analysis pipelines (e.g., ChIP‑seq peak calling, motif discovery)
- Generate full provenance and publication‑ready methods sections automatically
Recent releases
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About
Stars
35
Forks
4
Languages
Python
Nextflow
Dockerfile
Downloads/week
28
↑195%
NPM Maintainers
1
Single npm maintainer
Contributors
2
Install & Platforms
Install via
pip
